Treeplyr
WebAn optional argument that specifies the column of data that contains the names to be matched to the tree. By default, it is set to "detect" which finds the column with the most … WebMatches phylogenetic trees and trait data, and allows simultaneous manipulation of the tree and data using 'dplyr'.
Treeplyr
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WebPackage ‘treeplyr’ was removed from the CRAN repository. Formerly available versions can be obtained from the archive. Archived on 2024-03-01 as issues were not corrected … WebOct 30, 2024 · Plotting a time-calibrated phylogeny of extinct and extant taxa. (Top) RevGadgets code for reading in and plotting a time-calibrated phylogeny of extant and extinct bears. We use the theme() function from ggplot2 to add the posterior-probability legend. (Bottom) The maximum sampled-ancestor clade-credibility tree for the bears.
Webtreeplyr. An R package for using dplyr on matched tree and data objects. To install treeplyr directly from github, use the package devtools: remotes::install_github ("uyedaj/treeplyr") WebAn implementation that combines trait data and a phylogenetic tree (or trees) into a single object of class treedata.table. The resulting object can be easily manipulated to simultaneously change the trait- and tree-level sampling. Currently implemented functions allow users to use a data.table syntax when performing operations on the trait dataset …
WebMar 1, 2024 · Check Details. Version: 0.1.10 Check: whether package can be installed Result: WARN Found the following significant warnings: Warning: replacing previous import ... WebNEWS AND NOTES 556 Changes on CRAN 2024-12-01 to 2024-06-30 by Kurt Hornik, Uwe Ligges and Achim Zeileis In the past 7 months, 1178 new packages were added to the CRAN package repository.
WebSep 26, 2024 · A fast, consistent tool for working with data frame like objects, both in memory and out of memory.
WebWe would like to show you a description here but the site won’t allow us. jason bethany smith harbourfreightedWebDescription. Reorders a treedata object. Both the tips and the data are automatically reordered to match. jason betancesWebAug 8, 2024 · Here we use the Anolis dataset from treeplyr. Traits in this dataset were randomly generated for a set of 100 species. library (ape) library (treedata.table) # Load … low income health servicesWebJun 12, 2024 · Check Details. Version: 0.1.7 Check: examples Result: ERROR Running examples in 'treeplyr-Ex.R' failed The error most likely occurred in: > base::assign(".ptime ... low income health plan san diegoWebIn treeplyr: 'dplyr' Functionality for Matched Tree and Data Objects. Description Usage Arguments Value Examples. View source: R/treeplyr_functions.R. Description. This … jason bethelWebHowever, to our knowledge, treeplyr (Uyeda & Harmon, 2024) and tidytree , both based on dplyr (Wickham et al., 2024a; Wickham et al., 2024b), are to our knowledge, the only … jasonbgraham flamingo flatware collectionWebtreeplyr can use dplyr-style functions (filter, mutate, reorder, etc.) on objects consisting of trees plus associated data. tidytree can convert a tree object in to a tidy data frame and has other tidy approaches to manipulate tree data. evobiR can do fuzzy matching of names (to allow some differences). jason betts herbert smith freehills